NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0099828_10020453

Scaffold Ga0099828_10020453


Overview

Basic Information
Taxon OID3300009089 Open in IMG/M
Scaffold IDGa0099828_10020453 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5160
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California, Eel River Critical Zone Observatory
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040820Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0099828_100204531F040820GGAGVLLSLKDGTEQGSAVLGQDPVAVIVSDDGKTAYVADSAPGDVYAVRLPGLQVAWKQHVGGAPFGLLLHQGRLFVSLFDGASVVELEPSSGSELASHPVPQGPAEMATDGAGHVVVAGTRGQLNVIGGGQLAAGNGFGVAYAGGRLWSADYERAELVPAGDDYRVGLPLPLFPFWLAAGAGDTLLIAAEGGTEDTDPGGVFAYDTGTGAFKTLANPKDPDQVLQSGATVFVAAHGDRDVLSIQNGRPSSWAHGVAAVGLAPDPLLAILVV

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.